# Copyright 2021 The JAX Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License from jax import lax import jax.numpy as jnp from jax._src.lax.lax import _const as _lax_const from jax._src.numpy.util import promote_args_inexact from jax._src.scipy.special import gammaln, xlogy from jax._src.typing import Array, ArrayLike def logpmf(k: ArrayLike, n: ArrayLike, p: ArrayLike, loc: ArrayLike = 0) -> Array: r"""Negative-binomial log probability mass function. JAX implementation of :obj:`scipy.stats.nbinom` ``logpmf``. The negative-binomial probability mass function is given by .. math:: f(k) = {{k+n-1} \choose {n-1}}p^n(1-p)^k for :math:`k \ge 0` and :math:`0 \le p \le 1`. Args: k: arraylike, value at which to evaluate the PMF n: arraylike, distribution shape parameter p: arraylike, distribution shape parameter loc: arraylike, distribution offset parameter Returns: array of logpdf values. See Also: :func:`jax.scipy.stats.nbinom.pmf` """ k, n, p, loc = promote_args_inexact("nbinom.logpmf", k, n, p, loc) one = _lax_const(k, 1) y = lax.sub(k, loc) comb_term = lax.sub( lax.sub(gammaln(lax.add(y, n)), gammaln(n)), gammaln(lax.add(y, one)) ) log_linear_term = lax.add(xlogy(n, p), xlogy(y, lax.sub(one, p))) log_probs = lax.add(comb_term, log_linear_term) return jnp.where(lax.lt(k, loc), -jnp.inf, log_probs) def pmf(k: ArrayLike, n: ArrayLike, p: ArrayLike, loc: ArrayLike = 0) -> Array: r"""Negative-binomial probability mass function. JAX implementation of :obj:`scipy.stats.nbinom` ``pmf``. The negative-binomial probability mass function is given by .. math:: f(k) = {{k+n-1} \choose {n-1}}p^n(1-p)^k for :math:`k \ge 0` and :math:`0 \le p \le 1`. Args: k: arraylike, value at which to evaluate the PMF n: arraylike, distribution shape parameter p: arraylike, distribution shape parameter loc: arraylike, distribution offset parameter Returns: array of pmf values. See Also: :func:`jax.scipy.stats.nbinom.logpmf` """ return lax.exp(logpmf(k, n, p, loc))